Detailed information of SNP:
|
SNP ID:
sf1207885953(Gbrowse)
Chromosome: chr12 Position: 7885953 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 77.12% | 22.88% |
| All Indica | 797 | 94.10% | 5.90% |
| All Japonica | 496 | 46.98% | 53.02% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 334 | 33.83% | 66.17% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207885953 | T->G | INTERGENIC | None |