Detailed information of SNP:
|
SNP ID:
sf1207887904(Gbrowse)
Chromosome: chr12 Position: 7887904 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 59.00% | 41.00% |
| All Indica | 780 | 92.56% | 7.44% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 361 | 94.18% | 5.82% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207887904 | T->G | INTERGENIC | None |