Detailed information of SNP:
|
SNP ID:
sf1207913645(Gbrowse)
Chromosome: chr12 Position: 7913645 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 54.28% | 45.72% |
| All Indica | 794 | 57.18% | 42.82% |
| All Japonica | 496 | 52.22% | 47.78% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 66.31% | 33.69% |
| Indica II | 212 | 55.66% | 44.34% |
| Indica Intermediate | 208 | 42.31% | 57.69% |
| Temperate Japonica | 334 | 70.96% | 29.04% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207913645 | C->T | LOC_Os12g13930(LOC_Os12g13930.1) | INTRON |