Detailed information of SNP:
|
SNP ID:
sf1207917847(Gbrowse)
Chromosome: chr12 Position: 7917847 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 85.96% | 14.04% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 497 | 61.57% | 38.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 46.57% | 53.43% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207917847 | A->T | LOC_Os12g13940(LOC_Os12g13940.1) | UTR_3_PRIME |