Detailed information of SNP:
|
SNP ID:
sf1207925785(Gbrowse)
Chromosome: chr12 Position: 7925785 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 96.82% | 3.18% |
| All Indica | 769 | 95.06% | 4.94% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 362 | 95.03% | 4.97% |
| Indica II | 203 | 95.57% | 4.43% |
| Indica Intermediate | 204 | 94.61% | 5.39% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207925785 | C->A | INTERGENIC | None |