Detailed information of SNP:
|
SNP ID:
sf1207941235(Gbrowse)
Chromosome: chr12 Position: 7941235 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 55.48% | 44.52% |
| All Indica | 787 | 29.61% | 70.39% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 366 | 36.61% | 63.39% |
| Indica II | 211 | 21.33% | 78.67% |
| Indica Intermediate | 210 | 25.71% | 74.29% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207941235 | G->A | INTERGENIC | None |