Detailed information of SNP:
|
SNP ID:
sf1207952692(Gbrowse)
Chromosome: chr12 Position: 7952692 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 70.51% | 29.49% |
| All Indica | 797 | 57.47% | 42.53% |
| All Japonica | 496 | 96.57% | 3.43% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 64.97% | 35.03% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 210 | 43.81% | 56.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207952692 | G->A | LOC_Os12g13990(LOC_Os12g13990.1) | Non-Synonymous SNP |