Detailed information of SNP:
|
SNP ID:
sf1207979415(Gbrowse)
Chromosome: chr12 Position: 7979415 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 57.57% | 42.43% |
| All Indica | 759 | 92.09% | 7.91% |
| All Japonica | 495 | 5.25% | 94.75% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 350 | 89.14% | 10.86% |
| Indica II | 207 | 95.65% | 4.35% |
| Indica Intermediate | 202 | 93.56% | 6.44% |
| Temperate Japonica | 333 | 3.60% | 96.40% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207979415 | A->G | LOC_Os12g14059(LOC_Os12g14059.1) | INTRON |