Detailed information of SNP:
|
SNP ID:
sf1207982328(Gbrowse)
Chromosome: chr12 Position: 7982328 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.60% | 43.40% |
| All Indica | 798 | 58.77% | 41.23% |
| All Japonica | 497 | 51.91% | 48.09% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 375 | 58.13% | 41.87% |
| Indica II | 212 | 52.36% | 47.64% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207982328 | G->A | INTERGENIC | None |