Detailed information of SNP:
|
SNP ID:
sf1207984656(Gbrowse)
Chromosome: chr12 Position: 7984656 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.95% | 25.05% |
| All Indica | 797 | 86.07% | 13.93% |
| All Japonica | 497 | 53.32% | 46.68% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 79.41% | 20.59% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 36.72% | 63.28% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207984656 | T->C | LOC_Os12g14070(LOC_Os12g14070.1) | INTRON |