Detailed information of SNP:
|
SNP ID:
sf1207993639(Gbrowse)
Chromosome: chr12 Position: 7993639 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 79.49% | 20.51% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 51.31% | 48.69% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 65.97% | 34.03% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207993639 | C->T | LOC_Os12g14090(LOC_Os12g14090.1) | INTRON |