Detailed information of SNP:
|
SNP ID:
sf1207994209(Gbrowse)
Chromosome: chr12 Position: 7994209 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.68% | 39.32% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207994209 | C->A | INTERGENIC | None |