Detailed information of SNP:
|
SNP ID:
sf1208006809(Gbrowse)
Chromosome: chr12 Position: 8006809 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 50.96% | 49.04% |
| All Indica | 793 | 80.20% | 19.80% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 369 | 74.25% | 25.75% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208006809 | C->T | INTERGENIC | None |