Detailed information of SNP:
SNP ID:
sf1208009576(Gbrowse)
Chromosome: chr12 Position: 8009576 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 94.86% | 5.14% |
All Indica | 799 | 96.62% | 3.38% |
All Japonica | 497 | 99.40% | 0.60% |
Aus | 67 | 38.81% | 61.19% |
Indica I | 375 | 93.87% | 6.13% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1208009576 | G->A | LOC_Os12g14120(LOC_Os12g14120.1) | Non-Synonymous SNP |