Detailed information of SNP:



SNP ID: sf1208009576(Gbrowse)

Chromosome: chr12

Position: 8009576
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 94.86% 5.14%
All Indica799 96.62% 3.38%
All Japonica497 99.40% 0.60%
Aus67 38.81% 61.19%
Indica I375 93.87% 6.13%
Indica II213 99.53% 0.47%
Indica Intermediate211 98.58% 1.42%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1208009576 G->A LOC_Os12g14120(LOC_Os12g14120.1) Non-Synonymous SNP