Detailed information of SNP:
|
SNP ID:
sf1208029304(Gbrowse)
Chromosome: chr12 Position: 8029304 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 59.07% | 40.93% |
| All Indica | 799 | 41.30% | 58.70% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 42.67% | 57.33% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208029304 | T->C | LOC_Os12g14150(LOC_Os12g14150.1) | INTRON |