Detailed information of SNP:
|
SNP ID:
sf1208051255(Gbrowse)
Chromosome: chr12 Position: 8051255 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1345 | 96.06% | 3.94% |
| All Indica | 728 | 93.27% | 6.73% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 95.22% | 4.78% |
| Indica II | 189 | 91.01% | 8.99% |
| Indica Intermediate | 183 | 91.80% | 8.20% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208051255 | C->T | LOC_Os12g14180(LOC_Os12g14180.1) | Non-Synonymous SNP |