Detailed information of SNP:
|
SNP ID:
sf1208051901(Gbrowse)
Chromosome: chr12 Position: 8051901 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 80.91% | 19.09% |
| All Indica | 795 | 87.30% | 12.70% |
| All Japonica | 491 | 68.02% | 31.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 84.14% | 15.86% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 331 | 77.64% | 22.36% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 67 | 47.76% | 52.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208051901 | A->C | LOC_Os12g14180(LOC_Os12g14180.1) | INTRON |