Detailed information of SNP:
|
SNP ID:
sf1208051907(Gbrowse)
Chromosome: chr12 Position: 8051907 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 57.40% | 42.60% |
| All Indica | 794 | 58.69% | 41.31% |
| All Japonica | 496 | 48.59% | 51.41% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 56.22% | 43.78% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 334 | 32.93% | 67.07% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208051907 | T->C | LOC_Os12g14180(LOC_Os12g14180.1) | INTRON |