Detailed information of SNP:
|
SNP ID:
sf1208065013(Gbrowse)
Chromosome: chr12 Position: 8065013 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 93.39% | 6.61% |
| All Indica | 756 | 88.89% | 11.11% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 93.02% | 6.98% |
| Indica II | 197 | 83.76% | 16.24% |
| Indica Intermediate | 201 | 86.57% | 13.43% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208065013 | G->A | LOC_Os12g14200(LOC_Os12g14200.1) | Non-Synonymous SNP |