Detailed information of SNP:
|
SNP ID:
sf1208072482(Gbrowse)
Chromosome: chr12 Position: 8072482 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 57.60% | 42.40% |
| All Indica | 797 | 60.48% | 39.52% |
| All Japonica | 495 | 52.12% | 47.88% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 72.00% | 28.00% |
| Indica II | 212 | 54.72% | 45.28% |
| Indica Intermediate | 210 | 45.71% | 54.29% |
| Temperate Japonica | 334 | 35.63% | 64.37% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208072482 | C->T | INTERGENIC | None |