Detailed information of SNP:
|
SNP ID:
sf1208076697(Gbrowse)
Chromosome: chr12 Position: 8076697 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 70.92% | 29.08% |
| All Indica | 796 | 57.04% | 42.96% |
| All Japonica | 493 | 96.35% | 3.65% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 51.34% | 48.66% |
| Indica II | 212 | 56.60% | 43.40% |
| Indica Intermediate | 210 | 67.62% | 32.38% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 5 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208076697 | G->A | LOC_Os12g14224(LOC_Os12g14224.1) | INTRON |