Detailed information of SNP:
|
SNP ID:
sf1208081283(Gbrowse)
Chromosome: chr12 Position: 8081283 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1274 | 64.29% | 35.71% |
| All Indica | 795 | 56.35% | 43.65% |
| All Japonica | 360 | 73.61% | 26.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 66.13% | 33.87% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 210 | 42.38% | 57.62% |
| Temperate Japonica | 266 | 87.97% | 12.03% |
| Tropical Japonica | 55 | 25.45% | 74.55% |
| Japonica Intermediate | 39 | 43.59% | 56.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208081283 | G->A | LOC_Os12g14230(LOC_Os12g14230.1) | INTRON |