Detailed information of SNP:
|
SNP ID:
sf1208085184(Gbrowse)
Chromosome: chr12 Position: 8085184 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 51.74% | 48.26% |
| All Indica | 789 | 53.11% | 46.89% |
| All Japonica | 497 | 49.90% | 50.10% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 368 | 58.97% | 41.03% |
| Indica II | 210 | 54.76% | 45.24% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 335 | 67.16% | 32.84% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208085184 | G->A | INTERGENIC | None |