Detailed information of SNP:
|
SNP ID:
sf1208086463(Gbrowse)
Chromosome: chr12 Position: 8086463 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 71.26% | 28.74% |
| All Indica | 797 | 55.96% | 44.04% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 373 | 63.27% | 36.73% |
| Indica II | 213 | 55.87% | 44.13% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208086463 | G->A | INTERGENIC | None |