Detailed information of SNP:
|
SNP ID:
sf1208103232(Gbrowse)
Chromosome: chr12 Position: 8103232 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 79.84% | 20.16% |
| All Indica | 794 | 95.34% | 4.66% |
| All Japonica | 497 | 52.11% | 47.89% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 93.80% | 6.20% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 34.63% | 65.37% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208103232 | C->T | INTERGENIC | None |