Detailed information of SNP:
|
SNP ID:
sf1208113649(Gbrowse)
Chromosome: chr12 Position: 8113649 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 51.68% | 48.32% |
| All Indica | 775 | 29.29% | 70.71% |
| All Japonica | 475 | 93.68% | 6.32% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 362 | 22.65% | 77.35% |
| Indica II | 209 | 34.93% | 65.07% |
| Indica Intermediate | 204 | 35.29% | 64.71% |
| Temperate Japonica | 326 | 96.01% | 3.99% |
| Tropical Japonica | 86 | 87.21% | 12.79% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208113649 | A->G | LOC_Os12g14260(LOC_Os12g14260.1) | INTRON |