Detailed information of SNP:
|
SNP ID:
sf1208121299(Gbrowse)
Chromosome: chr12 Position: 8121299 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 80.80% | 19.20% |
| All Indica | 760 | 66.45% | 33.55% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 75.97% | 24.03% |
| Indica II | 201 | 63.68% | 36.32% |
| Indica Intermediate | 197 | 51.78% | 48.22% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208121299 | A->G | LOC_Os12g14270(LOC_Os12g14270.1) | Non-Synonymous SNP |