Detailed information of SNP:
|
SNP ID:
sf1208140430(Gbrowse)
Chromosome: chr12 Position: 8140430 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 52.45% | 47.55% |
| All Indica | 774 | 28.68% | 71.32% |
| All Japonica | 495 | 94.14% | 5.86% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 362 | 31.22% | 68.78% |
| Indica II | 210 | 24.76% | 75.24% |
| Indica Intermediate | 202 | 28.22% | 71.78% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208140430 | G->A | LOC_Os12g14290(LOC_Os12g14290.1) | Non-Synonymous SNP |