Detailed information of SNP:
|
SNP ID:
sf1208151093(Gbrowse)
Chromosome: chr12 Position: 8151093 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 52.82% | 47.18% |
| All Indica | 791 | 29.20% | 70.80% |
| All Japonica | 491 | 93.89% | 6.11% |
| Aus | 65 | 35.38% | 64.62% |
| Indica I | 374 | 26.47% | 73.53% |
| Indica II | 211 | 29.38% | 70.62% |
| Indica Intermediate | 206 | 33.98% | 66.02% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 90 | 86.67% | 13.33% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208151093 | T->C | INTERGENIC | None |