Detailed information of SNP:
|
SNP ID:
sf1208152668(Gbrowse)
Chromosome: chr12 Position: 8152668 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 56.71% | 43.29% |
| All Indica | 768 | 33.33% | 66.67% |
| All Japonica | 493 | 91.08% | 8.92% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 356 | 29.78% | 70.22% |
| Indica II | 205 | 31.22% | 68.78% |
| Indica Intermediate | 207 | 41.55% | 58.45% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 90 | 78.89% | 21.11% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208152668 | A->G | INTERGENIC | None |