Detailed information of SNP:
|
SNP ID:
sf1208163900(Gbrowse)
Chromosome: chr12 Position: 8163900 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 68.29% | 31.71% |
| All Indica | 788 | 89.97% | 10.03% |
| All Japonica | 484 | 37.60% | 62.40% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 370 | 95.41% | 4.59% |
| Indica II | 208 | 77.88% | 22.12% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 327 | 19.88% | 80.12% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 65 | 60.00% | 40.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208163900 | G->A | INTERGENIC | None |