Detailed information of SNP:
|
SNP ID:
sf1208171484(Gbrowse)
Chromosome: chr12 Position: 8171484 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 77.85% | 22.15% |
| All Indica | 785 | 95.80% | 4.20% |
| All Japonica | 497 | 52.52% | 47.48% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 368 | 95.38% | 4.62% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208171484 | C->T | INTERGENIC | None |