Detailed information of SNP:
|
SNP ID:
sf1208180139(Gbrowse)
Chromosome: chr12 Position: 8180139 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 72.55% | 27.45% |
| All Indica | 797 | 59.22% | 40.78% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 373 | 58.18% | 41.82% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208180139 | T->C | INTERGENIC | None |