Detailed information of SNP:
SNP ID:
sf1208185007(Gbrowse)
Chromosome: chr12 Position: 8185007 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1405 | 68.11% | 31.89% |
All Indica | 792 | 55.81% | 44.19% |
All Japonica | 493 | 91.48% | 8.52% |
Aus | 64 | 51.56% | 48.44% |
Indica I | 373 | 54.16% | 45.84% |
Indica II | 209 | 51.67% | 48.33% |
Indica Intermediate | 210 | 62.86% | 37.14% |
Temperate Japonica | 332 | 93.98% | 6.02% |
Tropical Japonica | 93 | 82.80% | 17.20% |
Japonica Intermediate | 68 | 91.18% | 8.82% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1208185007 | A->G | INTERGENIC | None |