Detailed information of SNP:
|
SNP ID:
sf1208185007(Gbrowse)
Chromosome: chr12 Position: 8185007 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 68.11% | 31.89% |
| All Indica | 792 | 55.81% | 44.19% |
| All Japonica | 493 | 91.48% | 8.52% |
| Aus | 64 | 51.56% | 48.44% |
| Indica I | 373 | 54.16% | 45.84% |
| Indica II | 209 | 51.67% | 48.33% |
| Indica Intermediate | 210 | 62.86% | 37.14% |
| Temperate Japonica | 332 | 93.98% | 6.02% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208185007 | A->G | INTERGENIC | None |