Detailed information of SNP:
|
SNP ID:
sf1208189877(Gbrowse)
Chromosome: chr12 Position: 8189877 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 76.45% | 23.55% |
| All Indica | 785 | 92.48% | 7.52% |
| All Japonica | 491 | 48.68% | 51.32% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 364 | 89.84% | 10.16% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 333 | 34.23% | 65.77% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 66 | 68.18% | 31.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208189877 | A->T | INTERGENIC | None |