Detailed information of SNP:
|
SNP ID:
sf1208192257(Gbrowse)
Chromosome: chr12 Position: 8192257 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 74.96% | 25.04% |
| All Indica | 798 | 60.90% | 39.10% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 61.50% | 38.50% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208192257 | T->C | LOC_Os12g14374(LOC_Os12g14374.1) | INTRON |