Detailed information of SNP:
|
SNP ID:
sf1208192482(Gbrowse)
Chromosome: chr12 Position: 8192482 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 70.39% | 29.61% |
| All Indica | 797 | 54.45% | 45.55% |
| All Japonica | 496 | 95.97% | 4.03% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 50.53% | 49.47% |
| Indica II | 213 | 51.17% | 48.83% |
| Indica Intermediate | 210 | 64.76% | 35.24% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208192482 | A->G | LOC_Os12g14374(LOC_Os12g14374.1) | INTRON |