Detailed information of SNP:
|
SNP ID:
sf1208205380(Gbrowse)
Chromosome: chr12 Position: 8205380 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 73.27% | 26.73% |
| All Indica | 798 | 59.02% | 40.98% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 57.22% | 42.78% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208205380 | T->C | LOC_Os12g14390(LOC_Os12g14390.1) | INTRON |