Detailed information of SNP:
|
SNP ID:
sf1208210021(Gbrowse)
Chromosome: chr12 Position: 8210021 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1328 | 94.65% | 5.35% |
| All Indica | 731 | 93.57% | 6.43% |
| All Japonica | 490 | 97.96% | 2.04% |
| Aus | 56 | 82.14% | 17.86% |
| Indica I | 341 | 93.84% | 6.16% |
| Indica II | 199 | 92.96% | 7.04% |
| Indica Intermediate | 191 | 93.72% | 6.28% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208210021 | T->C | LOC_Os12g14400(LOC_Os12g14400.1) | Synonymous |