Detailed information of SNP:
|
SNP ID:
sf1208210066(Gbrowse)
Chromosome: chr12 Position: 8210066 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 92.12% | 7.88% |
| All Indica | 747 | 89.83% | 10.17% |
| All Japonica | 485 | 98.76% | 1.24% |
| Aus | 59 | 67.80% | 32.20% |
| Indica I | 355 | 94.93% | 5.07% |
| Indica II | 198 | 85.86% | 14.14% |
| Indica Intermediate | 194 | 84.54% | 15.46% |
| Temperate Japonica | 327 | 99.39% | 0.61% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208210066 | T->C | LOC_Os12g14400(LOC_Os12g14400.1) | Synonymous |