Detailed information of SNP:
|
SNP ID:
sf1208210231(Gbrowse)
Chromosome: chr12 Position: 8210231 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 97.58% | 2.42% |
| All Indica | 792 | 97.98% | 2.02% |
| All Japonica | 494 | 96.56% | 3.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208210231 | C->T | LOC_Os12g14400(LOC_Os12g14400.1) | Synonymous |