Detailed information of SNP:
|
SNP ID:
sf1208223554(Gbrowse)
Chromosome: chr12 Position: 8223554 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 71.44% | 28.56% |
| All Indica | 795 | 57.86% | 42.14% |
| All Japonica | 490 | 96.53% | 3.47% |
| Aus | 63 | 57.14% | 42.86% |
| Indica I | 372 | 55.65% | 44.35% |
| Indica II | 212 | 53.77% | 46.23% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 330 | 97.58% | 2.42% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208223554 | G->A | INTERGENIC | None |