Detailed information of SNP:
|
SNP ID:
sf1208223785(Gbrowse)
Chromosome: chr12 Position: 8223785 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 69.80% | 30.20% |
| All Indica | 795 | 56.48% | 43.52% |
| All Japonica | 496 | 94.35% | 5.65% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 374 | 54.55% | 45.45% |
| Indica II | 212 | 51.89% | 48.11% |
| Indica Intermediate | 209 | 64.59% | 35.41% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208223785 | T->C | INTERGENIC | None |