Detailed information of SNP:
|
SNP ID:
sf1208224130(Gbrowse)
Chromosome: chr12 Position: 8224130 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 74.13% | 25.87% |
| All Indica | 796 | 58.79% | 41.21% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 57.10% | 42.90% |
| Indica II | 212 | 54.25% | 45.75% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208224130 | A->G | INTERGENIC | None |