Detailed information of SNP:
|
SNP ID:
sf1208224294(Gbrowse)
Chromosome: chr12 Position: 8224294 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 70.39% | 29.61% |
| All Indica | 797 | 57.09% | 42.91% |
| All Japonica | 495 | 95.15% | 4.85% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 373 | 54.69% | 45.31% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208224294 | C->T | INTERGENIC | None |