Detailed information of SNP:
|
SNP ID:
sf1208227589(Gbrowse)
Chromosome: chr12 Position: 8227589 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 73.45% | 26.55% |
| All Indica | 791 | 59.04% | 40.96% |
| All Japonica | 492 | 94.92% | 5.08% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 367 | 57.22% | 42.78% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 331 | 95.17% | 4.83% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208227589 | C->G | INTERGENIC | None |