Detailed information of SNP:
|
SNP ID:
sf1208260769(Gbrowse)
Chromosome: chr12 Position: 8260769 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 55.16% | 44.84% |
| All Indica | 780 | 57.05% | 42.95% |
| All Japonica | 495 | 47.27% | 52.73% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 363 | 53.44% | 46.56% |
| Indica II | 208 | 54.33% | 45.67% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 333 | 63.36% | 36.64% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208260769 | G->A | INTERGENIC | None |