Detailed information of SNP:
|
SNP ID:
sf1208262129(Gbrowse)
Chromosome: chr12 Position: 8262129 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 57.78% | 42.22% |
| All Indica | 777 | 93.82% | 6.18% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 60 | 41.67% | 58.33% |
| Indica I | 357 | 94.40% | 5.60% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208262129 | G->A | INTERGENIC | None |