Detailed information of SNP:
|
SNP ID:
sf1208266599(Gbrowse)
Chromosome: chr12 Position: 8266599 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 78.63% | 21.37% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 493 | 50.91% | 49.09% |
| Aus | 65 | 63.08% | 36.92% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 67.37% | 32.63% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208266599 | G->A | LOC_Os12g14480(LOC_Os12g14480.1) | INTRON |