Detailed information of SNP:
|
SNP ID:
sf1208267925(Gbrowse)
Chromosome: chr12 Position: 8267925 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 55.48% | 44.52% |
| All Indica | 788 | 50.51% | 49.49% |
| All Japonica | 482 | 62.86% | 37.14% |
| Aus | 65 | 58.46% | 41.54% |
| Indica I | 366 | 61.20% | 38.80% |
| Indica II | 212 | 47.64% | 52.36% |
| Indica Intermediate | 210 | 34.76% | 65.24% |
| Temperate Japonica | 324 | 78.70% | 21.30% |
| Tropical Japonica | 90 | 20.00% | 80.00% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1208267925 | A->G | INTERGENIC | None |